| Table S1B. HNF4alpha Binding Motifs H4.72-141 | |||||||||
| HNF4 Motif Finder, Sladek Lab Website | |||||||||
| H4 No.1 | Motif Sequence | Reference2 | PMID | ||||||
| H4.72 | GGGGCAaAGTCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.73 | GGGTCAaAGGTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.74 | GGGCCAaAGTCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.75 | AGGCCAaAGTTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.76 | GGAGCAaAGTTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.77 | AGGTCAaAGGGCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.78 | GGTTTAaAGTTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.79 | AGTTCAaAGAGCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.80 | GGGTCAaGGGTCG | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.81 | AGGTCAgAGGTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.82 | AGGCCAaAGGGCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.83 | AGAGCAaAGGTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.84 | AGTCCAaAAGTCC | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.85 | AGTTCAaAGTGCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.86 | GGGTCAaAGGCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.87 | GGCTCAaAGTCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.88 | AGTCCAaAGTTTA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.89 | AGGTCAaAGGCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.90 | AGTCCAaAGGCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.91 | CGAGCAaAGGCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.92 | AGTTCAgAGGTCT | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.93 | AGCTTAaAGTTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.94 | AGGTCAgAGTTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.95 | AGTTCAcAGTTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.96 | GGTTTAaAGGTTT | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.97 | AGGCCAaGGTTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.97 | AGGCCAaGGTTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.98 | AGGGCAaAAGCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.99 | AGGTCTaAGGTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.100 | AGCTCAaGGTTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.101 | GGGTTCaAGGTTA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.102 | AGGTCAgAGGTTA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.103 | AGGTTAaAGATCG | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.104 | AGGTTCaAGGTTA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.105 | GGGGCAaAGTTTA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.106 | AGGGAAaAGGTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.107 | GGGCTAaAGTTTA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.108 | AGTCCAaGGGTTC | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.109 | AGGCTAaAGTGCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.110 | GAGTCAaGGGTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.111 | AGGTCAgGGGTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.112 | GGTCCAaAGGTTA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.113 | AAAGCAaAGGTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.114 | GGGCCAgGGTCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.115 | AGGTCAaAATGCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.116 | GGGCCAaTGTTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.117 | GAGGCAaAAGTCC | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.118 | AGGCAAaAGTCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.119 | GGTCAAaAGGGCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.120 | AGGGCAgAGGCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.121 | AGACCAaAATCCG | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.122 | AGAATAaAGATTA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.123 | AGGTCAgGGGCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.124 | GGGTCAgGGGCCC | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.125 | GGGTCAaGAGTCG | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.126 | GGGTAGaTTGTTG | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.127 | AGGTCAaGGGTTT | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.128 | AGTTCAaGGGTTT | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.129 | GGGCTGaAGGGCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.130 | AGAGCAaTGGTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.131 | GGGTCAgTGGCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.132 | AGGTCAaGGGCTG | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.133 | GGGTCAgAGGCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.134 | AGGGTAaAGGCGA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.135 | AGGGCAgAAGCCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.136 | AGAGCAaAGGCAA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.137 | AGTTCTaAGGTCT | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.138 | GGGGAAaAGGTCC | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.139 | AGTCCAgAATTCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.140 | GGATGTaAGGTCC | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| H4.141 | AGGCTGaAGTGCA | Unpublished, used in Ellrott et al. 2002 | 12385991 | ||||||
| Legend: | |||||||||
| 1H4 No. : arbitary number assigned to HNF4alpha binding sites tested in EMSA. (See Table S1A for motifs 1-71 and 142-217. | |||||||||
| 2These motifs were used along with motifs H4.1-71 to develop the Markov Model published by Ellrott et al 2002 | |||||||||
| EMSA by: | |||||||||
| Chuh Yang (in Sladek lab) | |||||||||